Berti Lab

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    DNA repair

    Antibiotic Targets

    KIEs by NMR

    Training

 

Research

 Overview
 DNA Repair Enzymes
 KIEs by NMR
 Training

Antibiotic Targets: Bacterial Carboxyvinyl Transferases

 

Resistance to existing antimicrobials is a serious and increasing problem; we are faced with the prospect of pan-resistant bacteria - bacteria that are resistant to all known antibiotics.

Tuberculosis is a particular problem. Nearly 9 million people contract active tuberculosis each year, and over 2 million die, with 98% of those deaths occurring in the developing world. Worldwide it is the leading cause of death of women of child-bearing age.

It took US$1 billion to control 500 cases of multi-drug resistant tuberculosis in New York City in the early 1990's. There are presently about 75,000 active cases of multi-drug resistant tuberculosis in the prison population in Russia alone. Clearly, there is a pressing need for new tuberculosis treatments.


AroA active site with its reaction intermediate bound.

MurA and AroA

MurA and AroA are bacterial enzymes that are antibiotic targets, and are the enzymes known that catalyze carboxyvinyl transfer reactions.

MurA is in peptidoglycan biosynthesis pathway, and is the target of the antibiotic fosfomycin. AroA is in the aromatic amino acids biosynthetic pathway. It is also present in the malaria parasite, and in plants, where it is the target of the herbicide glyphosate (the active ingredient in Roundup).

Although there are inhibitors for both enzymes, there is a pressing need for better ones. Fosfomycin often fails because of antibiotic-induced resistance, and tuberculosis is intrinsically resistant. Glyphosate is a good herbicide, but is not an antibiotic.

Our goal is to understand the mechanisms of MurA and AroA in atomic detail, then exploit that knowledge to design inhibitors that will be effective as antibiotics. We are studying MurA and AroA from E. coli, and MurA from Lyme disease, which is closely related to tuberculosis MurA and is resistant to fosfomycin.



MurA reaction: (left) substrates UDP-GlcNAc + PEP; (centre) tetrahedral intermediate, and (right) products enolpyruvyl-UDP-GlcNAc + phosphate. The top figure shows the electrostatic charge on the surface of the molecules, going from negative (red) to positive (blue).